UMC publications

Enwall, K., Throbäck, I.N., Stenberg, M., Söderström, M. and Hallin, S. (2010). Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management. Applied and Environmental Microbiology, in press doi:10.1128/AEM.02197-09: Ahead on-line.

Jones, C. M. and Hallin, S. (2010). Ecological and evolutionary factors underlying global and local assembly of denitrifier communities. The ISME Journal, in press doi:10.1038/ismej.2009.152. Ahead on-line.

Philippot, L., Bru, D, Saby, N.P.M., Cuhel, J. , Arrouays, D., Simek, M. and Hallin, S. (2009). Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree. Environmental Microbiology, 11: 3096–3104.

Logares, R., Bråte, J., Heinrich, F., Shalchian-Tabrizi, K., Bertilsson, S. Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11) (2009). Molecular Biology and Evolution.

Logares, R., Bråte, J., Bertilsson, S., Clasen, J.L., Shalchian-Tabrizi, K., Rengefors, K. (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology. In press.

Bize, A., Karlsson, E. A., Ekefjärd, K., Quax, T. E. F., Pina, M., Prevost, M.-C., Forterre, P., Tenaillon, O., Bernander, R., Prangishvili, D. (2009). A unique virus release mechanism in the Archaea. Proc. Natl. Acad. Sci. USA: Epub ahead of print.

Wu, Z., Hjort, K. (2009). Surface modification of PDMS by gradient-induced migration of embedded Pluronic. Lab on a Chip 9: 1500-1503.

Wu, Z., Willing, B., Bjerketorp, J., Jansson, J. K., Hjort, K. (2009). Soft inertial microfluidics for high throughput separation of bacteria from human blood cells. Lab on a Chip. Epub ahead of print.

Hallin, S., Jones, C., Schloter, M., Philippot, L. (2009). Relationship between N-cycling communities and ecosystem functioning in a 50 years old fertilization experiment. ISME J. 3: 597-605.

Enwall, K., Hallin, S. (2009). Comparison of T-RFLP and DGGA techniques to assess denitrifier community composition. Lett. Appl. Microbiol. 48: 145-148.

Ruiz-Rueda, O., Hallin, S., Bañeras, L. (2009). Structure and function of denitrifying and nitrifying bacterial communities in relation to plant species in a constructed wetland. FEMS Microbiol. Ecol. 2: 308-319.

Nygren, C., Eberhardt, U., Karlsson. M., Parrent, J., Lindahl, B., Taylor, A. (2008) Growth on nitrate and occurrence of nitrate reductase-encoding genes in a phylogenetically diverse range of ectomycorrhizal fungi. New Phytologist 180: 875-889.

Philippot, L., Hallin, S., Börjesson, G., Baggs, E. M. (2009). Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil. 321: 61-81.

Hallin, S., Bernander, R. (2008). The role of microbes in nature. Sustainability 2: June 2008.

Karlsson, M., Stenlid, J. (2009). Evolution of family 18 glycoside hydrolases: diversity, domain structures and phylogenetic relationships. J. Mol. Microbiol. Biotechnol. 16: 208-223.

Jones, C. M., Stres, B., Rosenquist, M., Hallin, S. (2008). Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol. Biol. Evol. 25: 1955-1966.

Hallin, S., Bernander, R. (2008). Uppsala Microbiomics Center: nya grepp på mikrobernas roll i naturen. Miljöforskning 2: 28-29.

Wu, Z., Hjort, K., Wicher, G., Fex Svenningsen, Å. (2008). Microfluidic high viability neural cell separation using viscoelastically tuned hydrodynamic spreading. Biomed. Microdev. DOI 10.1007/s105444-008-9174-7.

Karlsson, M., Stenlid, J. (2008). Comparative evolutionary histories of the fungal chitinase gene family reveal non-random size expansions and contractions due to adaptive natural selection. Evolutionary Bioinformatics. 4: 47-60.

Bjerketorp, J., Chiang, A. N. T., Hjort, K., Rosenquist, M., Liu, W.-T., Jansson, J. K. (2008). Rapid lab-on-a-chip profiling of human gut bacteria. J. Microbiological Methods 72: 82-90.

Grogan, D. W., Ozarzak, M. A., Bernander, R. (2008). Variation in gene content among geographically diverse Sulfolobus isolates. Environ. Microbiol. 10: 137-146.

Van Elsas, J. D., Jansson, J. K., Trevors, J. T. (Eds.) (2007) Modern soil microbiology, 2nd edition. CRC Press, Taylor and Francis group.

Wu, Z., Liu, A. Q., Hjort, K. (2007). Microfluidic continuous particle/cell separation via electroosmotically tuned hydrodynamic spreading. J. Micromech. Microeng. 17: 1992-1999.

Widenfalk, A., Bertilsson, S., Sundh, I., Goedkoop, W. (2007). Effects of pesticides on community composition and activity of sediment microbes - responses at various levels of community organization. Environ. Pollut. 152: 576-584.